Citing

If you use KVFinder-web, please cite [3] and [4].

If you use depth and hydropathy characterization, please also cite [1].

If you refer to our cavity detection algorithm, please also cite: [5].

References

[1]

João Victor da Silva Guerra, Helder Veras Ribeiro-Filho, Gabriel Ernesto Jara, Leandro Oliveira Bortot, José Geraldo de Carvalho Pereira, and Paulo Sérgio Lopes-de-Oliveira. pyKVFinder: an efficient and integrable python package for biomolecular cavity detection and characterization in data science. BMC Bioinformatics, December 2021. URL: https://doi.org/10.1186/s12859-021-04519-4, doi:10.1186/s12859-021-04519-4.

[2]

D Eisenberg, R M Weiss, and T C Terwilliger. The hydrophobic moment detects periodicity in protein hydrophobicity. Proceedings of the National Academy of Sciences, 81(1):140–144, January 1984. URL: https://doi.org/10.1073/pnas.81.1.140, doi:10.1073/pnas.81.1.140.

[3]

João Victor Da Silva Guerra, Helder Veras Ribeiro filho, Leandro Oliveira Bortot, Rodrigo Vargas Honorato, José Geraldo De Carvalho Pereira, and Paulo Sérgio Lopes-de-oliveira. ParKVFinder: a thread-level parallel approach in biomolecular cavity detection. SoftwareX, 12:100606, July 2020. URL: https://doi.org/10.1016/j.softx.2020.100606, doi:10.1016/j.softx.2020.100606.

[4]

João V S Guerra, Helder V Ribeiro-Filho, José G C Pereira, and Paulo S Lopes-de-Oliveira. KVFinder-web: a web-based application for detecting and characterizing biomolecular cavities. Nucleic Acids Research, 05 2023. gkad324. URL: https://doi.org/10.1093/nar/gkad324, doi:10.1093/nar/gkad324.

[5]

Saulo Hp Oliveira, Felipe An Ferraz, Rodrigo V Honorato, José Xavier-neto, Tiago Jp Sobreira, and Paulo Sl De Oliveira. KVFinder: steered identification of protein cavities as a PyMOL plugin. BMC Bioinformatics, June 2014. URL: https://doi.org/10.1186/1471-2105-15-197, doi:10.1186/1471-2105-15-197.